SequenceMap

java.lang.Object

gov.nasa.jpl.sequencing.SequenceMap

public class SequenceMap extends Object

Constructor Summary

Constructors

Modifier

Constructor

Description

protected

SequenceMap()
Method Summary

Modifier and Type

Method

Description

void

addSequence(Sequence sequence)

Adds a sequence object to the sequence map by seqid.

void

addSequenceFragment(SequenceFragment seqFragment, String seqid)

Adds as sequence fragment to the appropriate seqid.

Collection<Sequence>

getAllSequences()

static SequenceMap

getSequenceMap()

void

resetSequences()

Clears the sequence map and orphan fragments list.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- SequenceMap
  
  protected SequenceMap()
Method Details
- getSequenceMap
  
  public static SequenceMap getSequenceMap()
- getAllSequences
  
  public Collection<Sequence> getAllSequences()
- addSequenceFragment
  
  public void addSequenceFragment(SequenceFragment seqFragment, String seqid)
  
  Adds as sequence fragment to the appropriate seqid.
  
  Parameters:
  
  seqFragment -
  
  seqid -
- addSequence
  
  public void addSequence(Sequence sequence)
  
  Adds a sequence object to the sequence map by seqid.
  
  Parameters:
  
  sequence -
- resetSequences
  
  public void resetSequences()
  
  Clears the sequence map and orphan fragments list. This is needed before executing the sequence sections of activities again.